Publications utilisant le Panel HGDP-CEPH

Boyrie L, Moreau C, Frugier F, Jacquet C, Bonhomme M. A linkage disequilibrium-based statistical test for Genome-Wide Epistatic Selection Scans in structured populations. Heredity (Edinb). 2021 Jan;126(1):77-91. doi: 10.1038/s41437-020-0349-1. Epub 2020 Jul 30. PMID: 32728044; PMCID: PMC7852595.

de la Puente M, Ruiz-Ramírez J, Ambroa-Conde A, Xavier C, Pardo-Seco J, Álvarez-Dios J, Freire-Aradas A, Mosquera-Miguel A, Gross TE, Cheung EYY, Branicki W, Nothnagel M, Parson W, Schneider PM, Kayser M, Carracedo Á, Lareu MV, Phillips C, On Behalf Of The Visage Consortium. Development and Evaluation of the Ancestry Informative Marker Panel of the VISAGE Basic Tool. Genes (Basel). 2021 Aug 22;12(8):1284. doi: 10.3390/genes12081284. PMID: 34440458; PMCID: PMC8391248.

Garg P, Martin-Trujillo A, Rodriguez OL, Gies SJ, Hadelia E, Jadhav B, Jain M, Paten B, Sharp AJ. Pervasive cis effects of variation in copy number of large tandem repeats on local DNA methylation and gene expression. Am J Hum Genet. 2021 May 6;108(5):809-824. doi: 10.1016/j.ajhg.2021.03.016. Epub 2021 Mar 31. PMID: 33794196; PMCID: PMC8206010.

Bergström A, McCarthy SA, Hui R, Almarri MA, Ayub Q, Danecek P, Chen Y, Felkel S, Hallast P, Kamm J, Blanché H, Deleuze JF, Cann H, Mallick S, Reich D, Sandhu MS, Skoglund P, Scally A, Xue Y, Durbin R, Tyler-Smith C. Insights into human genetic variation and population history from 929 diverse genomes. Science. 2020 Mar 20;367(6484):eaay5012. doi: 10.1126/science.aay5012. PMID: 32193295; PMCID: PMC7115999.

Boyrie L, Moreau C, Frugier F, Jacquet C, Bonhomme M. A linkage disequilibrium-based statistical test for Genome-Wide Epistatic Selection Scans in structured populations. Heredity (Edinb). 2021 Jan;126(1):77-91. doi: 10.1038/s41437-020-0349-1. Epub 2020 Jul 30. PMID: 32728044; PMCID: PMC7852595.

Carvalho Gontijo C, Porras-Hurtado LG, Freire-Aradas A, Fondevila M, Santos C, Salas A, Henao J, Isaza C, Beltrán L, Nogueira Silbiger V, Castillo A, Ibarra A, Moreno Chavez F, Söchtig J, Ruiz Y, Barreto G, Rondon F, Zabala W, Borjas L, de Oliveira SF, Carracedo A, Lareu MV, Phillips C. PIMA: A population informative multiplex for the Americas. Forensic Sci Int Genet. 2020 Jan;44:102200. doi: 10.1016/j.fsigen.2019.102200. Epub 2019 Nov 5. Erratum in: Forensic Sci Int Genet. 2020 Jun 20;48:102320. PMID: 31760353.

de la Puente M, Ruiz-Ramírez J, Ambroa-Conde A, Xavier C, Amigo J, Casares de Cal MÁ, Gómez-Tato A, Carracedo Á, Parson W, Phillips C, Lareu MV. Broadening the Applicability of a Custom Multi-Platform Panel of Microhaplotypes: Bio-Geographical Ancestry Inference and Expanded Reference Data. Front Genet. 2020 Oct 20;11:581041. doi: 10.3389/fgene.2020.581041. PMID: 33193704; PMCID: PMC7606911.

Galimberti M, Leuenberger C, Wolf B, Szilágyi SM, Foll M, Wegmann D. Detecting Selection from Linked Sites Using an F-Model. Genetics. 2020 Dec;216(4):1205-1215. doi: 10.1534/genetics.120.303780. Epub 2020 Oct 16. PMID: 33067324; PMCID: PMC7768260.

Ji L, Wu D, Xie H, Yao B, Chen Y, Irwin DM, Huang D, Xu J, Tang NLS, Zhang Y. Ambient Temperature is A Strong Selective Factor Influencing Human Development and Immunity. Genomics Proteomics Bioinformatics. 2020 Oct;18(5):489-500. doi: 10.1016/j.gpb.2019.11.009. Epub 2020 Aug 19. PMID: 32822870; PMCID: PMC8377383.

Khubrani YM, Jobling MA, Wetton JH. Massively parallel sequencing of sex-chromosomal STRs in Saudi Arabia reveals patrilineage-associated sequence variants. Forensic Sci Int Genet. 2020 Nov;49:102402. doi: 10.1016/j.fsigen.2020.102402. Epub 2020 Oct 2. PMID: 33035796.

Trifonova EA, Popovich AA, Bocharova AV, Vagaitseva KV, Stepanov VA. [The Role of Natural Selection in the Formation of the Genetic Structure of Populations by SNP Markers in Association with Body Mass Index and Obesity]. Mol Biol (Mosk). 2020 May-Jun;54(3):398-411. Russian. doi: 10.31857/S0026898420030179. PMID: 32492003.

Urnikytė A, Molytė A, Pranckevičienė E, Kučinskienė ZA, Kučinskas V. Inferring Effective Population Size and Divergence Time in the Lithuanian Population According to High-Density Genotyping Data. Genes (Basel). 2020 Mar 10;11(3):293. doi: 10.3390/genes11030293. PMID: 32164396; PMCID: PMC7140885.

Augusto DG, Norman PJ, Dandekar R, Hollenbach JA. Fluctuating and Geographically Specific Selection Characterize Rapid Evolution of the Human KIR Region. Front Immunol. 2019 May 17;10:989. doi: 10.3389/fimmu.2019.00989. PMID: 31156615; PMCID: PMC6533848.

He G, Adnan A, Rakha A, Yeh HY, Wang M, Zou X, Guo J, Rehman M, Fawad A, Chen P, Wang CC. A comprehensive exploration of the genetic legacy and forensic features of Afghanistan and Pakistan Mongolian-descent Hazara. Forensic Sci Int Genet. 2019 Sep;42:e1-e12. doi: 10.1016/j.fsigen.2019.06.018. Epub 2019 Jun 25. PMID: 31257046.

Hsieh P, Vollger MR, Dang V, Porubsky D, Baker C, Cantsilieris S, Hoekzema K, Lewis AP, Munson KM, Sorensen M, Kronenberg ZN, Murali S, Nelson BJ, Chiatante G, Maggiolini FAM, Blanché H, Underwood JG, Antonacci F, Deleuze JF, Eichler EE. Adaptive archaic introgression of copy number variants and the discovery of previously unknown human genes. Science. 2019 Oct 18;366(6463):eaax2083. doi: 10.1126/science.aax2083. PMID: 31624180; PMCID: PMC6860971.

Jin XY, Wei YY, Lan Q, Cui W, Chen C, Guo YX, Fang YT, Zhu BF. A set of novel SNP loci for differentiating continental populations and three Chinese populations. PeerJ. 2019 Mar 29;7:e6508. doi: 10.7717/peerj.6508. PMID: 30956897; PMCID: PMC6445247.

Petit F, Minnai F, Chiaroni J, Underhill PA, Bailly P, Mazières S, Costedoat C. The radial expansion of the Diego blood group system polymorphisms in Asia: mark of co-migration with the Mongol conquests. Eur J Hum Genet. 2019 Jan;27(1):125-132. doi: 10.1038/s41431-018-0245-9. Epub 2018 Aug 24. PMID: 30143806; PMCID: PMC6303257.

Corona E, Wang L, Ko D, Patel CJ. Systematic detection of positive selection in the human-pathogen interactome and lasting effects on infectious disease susceptibility. PLoS One. 2018 May 25;13(5):e0196676. doi: 10.1371/journal.pone.0196676. PMID: 29799843; PMCID: PMC5969750.

Gontijo CC, Mendes FM, Santos CA, Klautau-Guimarães MN, Lareu MV, Carracedo Á, Phillips C, Oliveira SF. Ancestry analysis in rural Brazilian populations of African descent. Forensic Sci Int Genet. 2018 Sep;36:160-166. doi: 10.1016/j.fsigen.2018.06.018. Epub 2018 Jun 28. PMID: 30031223.

Hao WQ, Liu J, Jiang L, Han JP, Wang L, Li JL, Ma Q, Liu C, Wang HJ, Li CX. Exploring the ancestry differentiation and inference capacity of the 28-plex AISNPs. Int J Legal Med. 2019 Jul;133(4):975-982. doi: 10.1007/s00414-018-1863-z. Epub 2018 Jun 7. Retraction in: Int J Legal Med. 2021 Nov;135(6):2149. PMID: 29882060.

Moriot A, Santos C, Freire-Aradas A, Phillips C, Hall D. Inferring biogeographic ancestry with compound markers of slow and fast evolving polymorphisms. Eur J Hum Genet. 2018 Nov;26(11):1697-1707. doi: 10.1038/s41431-018-0215-2. Epub 2018 Jul 11. PMID: 29995845; PMCID: PMC6189140.

Petit F, Minnai F, Chiaroni J, Underhill PA, Bailly P, Mazières S, Costedoat C. The radial expansion of the Diego blood group system polymorphisms in Asia: mark of co-migration with the Mongol conquests. Eur J Hum Genet. 2019 Jan;27(1):125-132. doi: 10.1038/s41431-018-0245-9. Epub 2018 Aug 24. PMID: 30143806; PMCID: PMC6303257.

Phillips C, Devesse L, Ballard D, van Weert L, de la Puente M, Melis S, Álvarez Iglesias V, Freire-Aradas A, Oldroyd N, Holt C, Syndercombe Court D, Carracedo Á, Lareu MV. Global patterns of STR sequence variation: Sequencing the CEPH human genome diversity panel for 58 forensic STRs using the Illumina ForenSeq DNA Signature Prep Kit. Electrophoresis. 2018 Nov;39(21):2708-2724. doi: 10.1002/elps.201800117. Epub 2018 Sep 3. PMID: 30101987.

Sethuraman A. Estimating Genetic Relatedness in Admixed Populations. G3 (Bethesda). 2018 Oct 3;8(10):3203-3220. doi: 10.1534/g3.118.200485. PMID: 30104261; PMCID: PMC6169378.

Cheung EYY, Gahan ME, McNevin D. Prediction of biogeographical ancestry from genotype: a comparison of classifiers. Int J Legal Med. 2017 Jul;131(4):901-912. doi: 10.1007/s00414-016-1504-3. Epub 2016 Dec 20. PMID: 27995319.

Das R, Upadhyai P. Application of geographic population structure (GPS) algorithm for biogeographical analyses of populations with complex ancestries: a case study of South Asians from 1000 genomes project. BMC Genet. 2017 Dec 28;18(Suppl 1):109. doi: 10.1186/s12863-017-0579-2. Erratum in: BMC Genet. 2018 Oct 25;19(1):96. PMID: 29297311; PMCID: PMC5751663.

Das R, Upadhyai P. Unraveling the Population History of Indian Siddis. Genome Biol Evol. 2017 Jun 1;9(6):1385-1392. doi: 10.1093/gbe/evx095. PMID: 28595281; PMCID: PMC5518532.

de la Puente M, Phillips C, Fondevila M, Gelabert-Besada M, Carracedo Á, Lareu MV. A forensic multiplex of nine novel pentameric-repeat STRs. Forensic Sci Int Genet. 2017 Jul;29:154-164. doi: 10.1016/j.fsigen.2017.04.007. Epub 2017 Apr 15. PMID: 28445836.

Furusawa T, Naka I, Yamauchi T, Natsuhara K, Eddie R, Kimura R, Nakazawa M, Ishida T, Ohtsuka R, Ohashi J. Polymorphisms associated with a tropical climate and root crop diet induce susceptibility to metabolic and cardiovascular diseases in Solomon Islands. PLoS One. 2017 Mar 2;12(3):e0172676. doi: 10.1371/journal.pone.0172676. PMID: 28253292; PMCID: PMC5333831.

Kuismin MO, Ahlinder J, Sillanpӓӓ MJ. CONE: Community Oriented Network Estimation Is a Versatile Framework for Inferring Population Structure in Large-Scale Sequencing Data. G3 (Bethesda). 2017 Oct 5;7(10):3359-3377. doi: 10.1534/g3.117.300131. PMID: 28830924; PMCID: PMC5633386.

Pan X, Wang Y, Wong, EHM et al. Fine population structure analysis method for genomes of many. Sci Rep 2017; 7:12608. doi: 10.1038/s41598-017-12319-1

Pappas DJ, Lizee A, Paunic V, Beutner KR, Motyer A, Vukcevic D, Leslie S, Biesiada J, Meller J, Taylor KD, Zheng X, Zhao LP, Gourraud PA, Hollenbach JA, Mack SJ, Maiers M. Significant variation between SNP-based HLA imputations in diverse populations: the last mile is the hardest. Pharmacogenomics J. 2018 May 22;18(3):367-376. doi: 10.1038/tpj.2017.7. Epub 2017 Apr 25. PMID: 28440342; PMCID: PMC5656547.

Parolo S, Lacroix S, Kaput J, Scott-Boyer MP. Ancestors' dietary patterns and environments could drive positive selection in genes involved in micronutrient metabolism-the case of cofactor transporters. Genes Nutr. 2017 Oct 4;12:28. doi: 10.1186/s12263-017-0579-x. PMID: 29043008; PMCID: PMC5628472.

Phillips C. A genomic audit of newly-adopted autosomal STRs for forensic identification. Forensic Sci Int Genet. 2017 Jul;29:193-204. doi: 10.1016/j.fsigen.2017.04.011. Epub 2017 Apr 23. PMID: 28463807.

Rawofi L, Edwards M, Krithika S, Le P, Cha D, Yang Z, Ma Y, Wang J, Su B, Jin L, Norton HL, Parra EJ. Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry. PeerJ. 2017 Nov 2;5:e3951. doi: 10.7717/peerj.3951. PMID: 29109912; PMCID: PMC5671666.

Rishishwar L, Jordan IK. Implications of human evolution and admixture for mitochondrial replacement therapy. BMC Genomics. 2017 Feb 8;18(1):140. doi: 10.1186/s12864-017-3539-3. PMID: 28178941; PMCID: PMC5299762.

Somers M, Olde Loohuis LM, Aukes MF, Pasaniuc B, de Visser KCL, Kahn RS, Sommer IE, Ophoff RA. A Genetic Population Isolate in The Netherlands Showing Extensive Haplotype Sharing and Long Regions of Homozygosity. Genes (Basel). 2017 May 4;8(5):133. doi: 10.3390/genes8050133. PMID: 28471380; PMCID: PMC5448007.

Zhang E, Bell AJ, Wilkie GS, Suárez NM, Batini C, Veal CD, Armendáriz-Castillo I, Neumann R, Cotton VE, Huang Y, Porteous DJ, Jarrett RF, Davison AJ, Royle NJ. Inherited Chromosomally Integrated Human Herpesvirus 6 Genomes Are Ancient, Intact, and Potentially Able To Reactivate from Telomeres. J Virol. 2017 Oct 27;91(22):e01137-17. doi: 10.1128/JVI.01137-17. PMID: 28835501; PMCID: PMC5660504.

Zhou Y, Yuan K, Yu Y, Ni X, Xie P, Xing EP, Xu S. Inference of multiple-wave population admixture by modeling decay of linkage disequilibrium with polynomial functions. Heredity (Edinb). 2017 May;118(5):503-510. doi: 10.1038/hdy.2017.5. Epub 2017 Feb 15. PMID: 28198814; PMCID: PMC5564381.

Badgeley MA, Shameer K, Glicksberg BS, et al. EHDViz: clinical dashboard development using open-source technologies. BMJ Open 2016 6:e010579. doi: 10.1136/bmjopen-2015-010579.

Basu A, Sarkar-Roy N, Majumder PP. Genomic reconstruction of the history of extant populations of India reveals five distinct ancestral components and a complex structure. Proc Natl Acad Sci U S A. 2016 Feb 9;113(6):1594-9. doi: 10.1073/pnas.1513197113. Epub 2016 Jan 25. PMID: 26811443; PMCID: PMC4760789.

Buhard O, Lagrange A, Guilloux A, Colas C, Chouchène M, Wanherdrick K, Coulet F, Guillerm E, Dorard C, Marisa L, Bokhari A, Greene M, El-Murr N, Bodo S, Muleris M, Sourouille I, Svrcek M, Cervera P, Blanché H, Lefevre JH, Parc Y, Lepage C, Chapusot C, Bouvier AM, Gaub MP, Selves J, Garrett K, Iacopetta B, Soong R, Hamelin R, Garrido C, Lascols O, André T, Fléjou JF, Collura A, Duval A. HSP110 T17 simplifies and improves the microsatellite instability testing in patients with colorectal cancer. J Med Genet. 2016 Jun;53(6):377-84. doi: 10.1136/jmedgenet-2015-103518. Epub 2016 Feb 1. PMID: 26831756.

Fu Q, Posth C, Hajdinjak M, Petr M, Mallick S, Fernandes D, Furtwängler A, Haak W, Meyer M, Mittnik A, Nickel B, Peltzer A, Rohland N, Slon V, Talamo S, Lazaridis I, Lipson M, Mathieson I, Schiffels S, Skoglund P, Derevianko AP, Drozdov N, Slavinsky V, Tsybankov A, Cremonesi RG, Mallegni F, Gély B, Vacca E, Morales MR, Straus LG, Neugebauer-Maresch C, Teschler-Nicola M, Constantin S, Moldovan OT, Benazzi S, Peresani M, Coppola D, Lari M, Ricci S, Ronchitelli A, Valentin F, Thevenet C, Wehrberger K, Grigorescu D, Rougier H, Crevecoeur I, Flas D, Semal P, Mannino MA, Cupillard C, Bocherens H, Conard NJ, Harvati K, Moiseyev V, Drucker DG, Svoboda J, Richards MP, Caramelli D, Pinhasi R, Kelso J, Patterson N, Krause J, Pääbo S, Reich D. The genetic history of Ice Age Europe. Nature. 2016 Jun 9;534(7606):200-5. doi: 10.1038/nature17993. Epub 2016 May 2. PMID: 27135931; PMCID: PMC4943878.

Granot Y, Tal O, Rosset S, Skorecki K. On the Apportionment of Population Structure. PLoS One. 2016 Aug 9;11(8):e0160413. doi: 10.1371/journal.pone.0160413. Erratum in: PLoS One. 2016;11(9):e0163343. PMID: 27505172; PMCID: PMC4978449.

Hao W, Song M, Storey JD. Probabilistic models of genetic variation in structured populations applied to global human studies. Bioinformatics 2016 Mar 32(5): 713–721. doi: 10.1093/bioinformatics/btv641.

Hellenthal G, Falush D, Myers S, Reich D, Busby GB, Lipson M, Capelli C, Patterson N. The Kalash Genetic Isolate? The Evidence for Recent Admixture. Am J Hum Genet. 2016 Feb 4;98(2):396-7. doi: 10.1016/j.ajhg.2015.12.025. PMID: 26849116; PMCID: PMC4746362.

Henn BM, Botigué LR, Peischl S, Dupanloup I, Lipatov M, Maples BK, Martin AR, Musharoff S, Cann H, Snyder MP, Excoffier L, Kidd JM, Bustamante CD. Distance from sub-Saharan Africa predicts mutational load in diverse human genomes. Proc Natl Acad Sci U S A. 2016 Jan 26;113(4):E440-9. doi: 10.1073/pnas.1510805112. Epub 2015 Dec 28. PMID: 26712023; PMCID: PMC4743782.

Llamas B, Fehren-Schmitz L, Valverde G, Soubrier J, Mallick S, Rohland N, Nordenfelt S, Valdiosera C, Richards SM, Rohrlach A, Romero MI, Espinoza IF, Cagigao ET, Jiménez LW, Makowski K, Reyna IS, Lory JM, Torrez JA, Rivera MA, Burger RL, Ceruti MC, Reinhard J, Wells RS, Politis G, Santoro CM, Standen VG, Smith C, Reich D, Ho SY, Cooper A, Haak W. Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas. Sci Adv. 2016 Apr 1;2(4):e1501385. doi: 10.1126/sciadv.1501385. PMID: 27051878; PMCID: PMC4820370.

Loret de Mola C, Hartwig FP, Gonçalves H, Quevedo Lde A, Pinheiro R, Gigante DP, Motta JV, Pereira AC, Barros FC, Horta BL. Genomic ancestry and the social pathways leading to major depression in adulthood: the mediating effect of socioeconomic position and discrimination. BMC Psychiatry. 2016 Sep 5;16(1):308. doi: 10.1186/s12888-016-1015-2. PMID: 27596337; PMCID: PMC5011949.

Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, Renaud G, Erlich Y, Willems T, Gallo C, Spence JP, Song YS, Poletti G, Balloux F, van Driem G, de Knijff P, Romero IG, Jha AR, Behar DM, Bravi CM, Capelli C, Hervig T, Moreno-Estrada A, Posukh OL, Balanovska E, Balanovsky O, Karachanak-Yankova S, Sahakyan H, Toncheva D, Yepiskoposyan L, Tyler-Smith C, Xue Y, Abdullah MS, Ruiz-Linares A, Beall CM, Di Rienzo A, Jeong C, Starikovskaya EB, Metspalu E, Parik J, Villems R, Henn BM, Hodoglugil U, Mahley R, Sajantila A, Stamatoyannopoulos G, Wee JT, Khusainova R, Khusnutdinova E, Litvinov S, Ayodo G, Comas D, Hammer MF, Kivisild T, Klitz W, Winkler CA, Labuda D, Bamshad M, Jorde LB, Tishkoff SA, Watkins WS, Metspalu M, Dryomov S, Sukernik R, Singh L, Thangaraj K, Pääbo S, Kelso J, Patterson N, Reich D. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature. 2016 Oct 13;538(7624):201-206. doi: 10.1038/nature18964. Epub 2016 Sep 21. PMID: 27654912; PMCID: PMC5161557.

Mendez FL, Poznik GD, Castellano S, Bustamante CD. The Divergence of Neandertal and Modern Human Y Chromosomes. Am J Hum Genet. 2016 Apr 7;98(4):728-34. doi: 10.1016/j.ajhg.2016.02.023. PMID: 27058445; PMCID: PMC4833433.

Ni X, Guo W, Yuan K, Yang X, Ma Z, Xu S, Zhang S. A Probabilistic Method for Estimating the Sharing of Identity by Descent for Populations with Migration. IEEE/ACM Trans Comput Biol Bioinform. 2016 Mar-Apr;13(2):281-90. doi: 10.1109/TCBB.2015.2480074. Epub 2015 Sep 18. PMID: 26394436.

Pagani L, Lawson DJ, Jagoda E, Mörseburg A, Eriksson A, Mitt M, Clemente F, Hudjashov G, DeGiorgio M, Saag L, Wall JD, Cardona A, Mägi R, Wilson Sayres MA, Kaewert S, Inchley C, Scheib CL, Järve M, Karmin M, Jacobs GS, Antao T, Iliescu FM, Kushniarevich A, Ayub Q, Tyler-Smith C, Xue Y, Yunusbayev B, Tambets K, Mallick CB, Saag L, Pocheshkhova E, Andriadze G, Muller C, Westaway MC, Lambert DM, Zoraqi G, Turdikulova S, Dalimova D, Sabitov Z, Sultana GNN, Lachance J, Tishkoff S, Momynaliev K, Isakova J, Damba LD, Gubina M, Nymadawa P, Evseeva I, Atramentova L, Utevska O, Ricaut FX, Brucato N, Sudoyo H, Letellier T, Cox MP, Barashkov NA, Skaro V, Mulahasanovic L, Primorac D, Sahakyan H, Mormina M, Eichstaedt CA, Lichman DV, Abdullah S, Chaubey G, Wee JTS, Mihailov E, Karunas A, Litvinov S, Khusainova R, Ekomasova N, Akhmetova V, Khidiyatova I, Marjanović D, Yepiskoposyan L, Behar DM, Balanovska E, Metspalu A, Derenko M, Malyarchuk B, Voevoda M, Fedorova SA, Osipova LP, Lahr MM, Gerbault P, Leavesley M, Migliano AB, Petraglia M, Balanovsky O, Khusnutdinova EK, Metspalu E, Thomas MG, Manica A, Nielsen R, Villems R, Willerslev E, Kivisild T, Metspalu M. Genomic analyses inform on migration events during the peopling of Eurasia. Nature. 2016 Oct 13;538(7624):238-242. doi: 10.1038/nature19792. Epub 2016 Sep 21. PMID: 27654910; PMCID: PMC5164938.

Sankararaman S, Mallick S, Patterson N, Reich D. The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-Day Humans. Curr Biol. 2016 May 9;26(9):1241-7. doi: 10.1016/j.cub.2016.03.037. Epub 2016 Mar 28. PMID: 27032491; PMCID: PMC4864120.

Skoglund P, Posth C, Sirak K, Spriggs M, Valentin F, Bedford S, Clark GR, Reepmeyer C, Petchey F, Fernandes D, Fu Q, Harney E, Lipson M, Mallick S, Novak M, Rohland N, Stewardson K, Abdullah S, Cox MP, Friedlaender FR, Friedlaender JS, Kivisild T, Koki G, Kusuma P, Merriwether DA, Ricaut FX, Wee JT, Patterson N, Krause J, Pinhasi R, Reich D. Genomic insights into the peopling of the Southwest Pacific. Nature. 2016 Oct 27;538(7626):510-513. doi: 10.1038/nature19844. Epub 2016 Oct 3. PMID: 27698418; PMCID: PMC5515717.

Skoglund P, Reich D. A genomic view of the peopling of the Americas. Curr Opin Genet Dev. 2016 Dec;41:27-35. doi: 10.1016/j.gde.2016.06.016. Epub 2016 Aug 6. PMID: 27507099; PMCID: PMC5161672.

Soundararajan U, Yun L, Shi M, Kidd KK. Minimal SNP overlap among multiple panels of ancestry informative markers argues for more international collaboration. Forensic Sci Int Genet. 2016 Jul;23:25-32. doi: 10.1016/j.fsigen.2016.01.013. Epub 2016 Jan 22. PMID: 26977931.

Aggarwal S, Gheware A, Agrawal A, Ghosh S, Prasher B, Mukerji M; Indian Genome Variation Consortium. Combined genetic effects of EGLN1 and VWF modulate thrombotic outcome in hypoxia revealed by Ayurgenomics approach. J Transl Med. 2015 Jun 6;13:184. doi: 10.1186/s12967-015-0542-9. PMID: 26047609; PMCID: PMC4457985.

Bilgin Sonay T, Carvalho T, Robinson MD, Greminger MP, Krützen M, Comas D, Highnam G, Mittelman D, Sharp A, Marques-Bonet T, Wagner A. Tandem repeat variation in human and great ape populations and its impact on gene expression divergence. Genome Res. 2015 Nov;25(11):1591-9. doi: 10.1101/gr.190868.115. Epub 2015 Aug 19. PMID: 26290536; PMCID: PMC4617956.

Blair LM, Feldman MW. The role of climate and out-of-Africa migration in the frequencies of risk alleles for 21 human diseases. BMC Genet. 2015 Jul 14;16:81. doi: 10.1186/s12863-015-0239-3. PMID: 26170196; PMCID: PMC4501093.

Ilyas M, Kim JS, Cooper J, Shin YA, Kim HM, Cho YS, Hwang S, Kim H, Moon J, Chung O, Jun J, Rastogi A, Song S, Ko J, Manica A, Rahman Z, Husnain T, Bhak J. Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan. BMC Genomics. 2015 Mar 12;16(1):172. doi: 10.1186/s12864-015-1290-1. PMID: 25887915; PMCID: PMC4362645.

Liu F, Visser M, Duffy DL, Hysi PG, Jacobs LC, Lao O, Zhong K, Walsh S, Chaitanya L, Wollstein A, Zhu G, Montgomery GW, Henders AK, Mangino M, Glass D, Bataille V, Sturm RA, Rivadeneira F, Hofman A, van IJcken WF, Uitterlinden AG, Palstra RJ, Spector TD, Martin NG, Nijsten TE, Kayser M. Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up. Hum Genet. 2015 Aug;134(8):823-35. doi: 10.1007/s00439-015-1559-0. Epub 2015 May 12. PMID: 25963972; PMCID: PMC4495261.

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